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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
133
ChIP-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
133
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
15
November, 2018
12
July, 2019
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
500
bam
478
bigWig
401
tsv
103
fastq
65
bed narrowPeak
62
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
549
Homo sapiens
Biosample type
486
tissue
61
cell line
2
primary cell
1
in vitro differentiated cells
Organ
785
liver
752
pancreas
674
connective tissue
489
adipose tissue
363
heart
349
epithelium
254
brain
226
kidney
225
vasculature
221
blood vessel
158
bone element
137
artery
86
limb
63
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
37
embryo
24
spleen
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
550
AMP
8
T1D
Genome assembly (visualization)
479
hg19
476
GRCh38
Lab
550
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
550 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
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cell line
GM12878
60
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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