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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
73
ChIP-seq
7
ATAC-seq
6
WGBS
DNase-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
30
October, 2019
12
July, 2019
5
October, 2018
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
452
bigWig
450
bam
406
tsv
36
bed narrowPeak
32
bigBed narrowPeak
24
fastq
7
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
494
Homo sapiens
Biosample type
492
tissue
2
primary cell
1
in vitro differentiated cells
Organ
699
pancreas
677
liver
639
connective tissue
465
adipose tissue
343
heart
319
epithelium
223
brain
214
kidney
203
vasculature
200
blood vessel
158
bone element
128
artery
69
limb
57
musculature of body
56
eye
55
blood
55
bodily fluid
30
embryo
30
nerve
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
495
AMP
Genome assembly (visualization)
453
hg19
451
GRCh38
Lab
495
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
495 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
tibial nerve
5
24
1
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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