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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
46
ChIP-seq
9
ATAC-seq
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
52
Transcription
46
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
broad histone mark
10
narrow histone mark
9
control
4
transcription factor
Date released
66
February, 2021
50
May, 2019
43
October, 2019
35
February, 2023
12
July, 2019
6
August, 2021
6
November, 2017
4
March, 2020
3
February, 2020
Available data
108
bam
88
bigWig
52
tsv
42
bed narrowPeak
29
bigBed narrowPeak
6
tagAlign
2
bed broadPeak
2
bigBed broadPeak
1
hic
1
tar
Organism
109
Homo sapiens
Biosample type
66
cell line
24
tissue
19
primary cell
Organ
449
connective tissue
387
adipose tissue
150
bone element
109
blood vessel
109
vasculature
90
artery
86
brain
74
heart
71
limb
62
epithelium
49
pancreas
40
nerve
35
kidney
21
eye
19
vein
10
liver
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
109
AMP
Genome assembly (visualization)
97
hg19
93
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
ChIP-seq
ATAC-seq
FAIRE-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
23
1
primary cell
endothelial cell of umbilical vein
17
1
1
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