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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
46
ChIP-seq
4
ATAC-seq
2
Capture-C
2
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
46
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
15
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
29
August, 2017
15
December, 2017
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
March, 2019
1
May, 2022
1
October, 2019
Available data
2165
bam
1955
bigWig
1331
bed narrowPeak
931
tsv
895
fastq
745
bigBed narrowPeak
290
tagAlign
161
txt
94
bed broadPeak
64
xls
58
bigBed broadPeak
55
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
56
Homo sapiens
Biosample type
26
tissue
25
in vitro differentiated cells
primary cell
3
stem cell
2
cell line
Organ
23
pancreas
17
connective tissue
adipose tissue
4
liver
3
embryo
1
musculature of body
Project
56
AMP
Genome assembly (visualization)
56
hg19
47
GRCh38
Lab
53
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
biosample_type!
primary cell
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
1
liver
3
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
See all biosamples
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