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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
DNase-seq
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
399
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
421
bigWig
399
tsv
43
fastq
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
486
Homo sapiens
Biosample type
486
tissue
primary cell
1
in vitro differentiated cells
Organ
733
liver
638
connective tissue
568
pancreas
487
adipose tissue
353
heart
249
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
117
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
48
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
487
AMP
Genome assembly (visualization)
422
hg19
420
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
biosample_type!
primary cell
lab.title!
Struan F.A. Grant, CHOP
month_released!
May, 2022
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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