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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
78
bam
56
bed narrowPeak
55
bigWig
48
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
86
Homo sapiens
Biosample type
86
tissue
primary cell
Organ
773
liver
642
connective tissue
592
pancreas
487
adipose tissue
353
heart
249
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
117
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
vein
Project
86
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
86
AMP-T2D consortium
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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