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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
95
ChIP-seq
74
single cell RNA-seq
68
ATAC-seq
47
WGBS
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
188
Transcription
95
DNA binding
68
DNA accessibility
47
DNA methylation
2
3D chromatin structure
Target of assay
72
histone
72
histone modification
38
narrow histone mark
34
broad histone mark
24
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
80
May, 2022
58
September, 2018
38
August, 2017
38
February, 2023
37
July, 2018
33
April, 2018
32
February, 2021
24
May, 2021
19
September, 2020
16
November, 2019
8
October, 2019
7
August, 2020
6
November, 2020
5
March, 2020
3
August, 2018
2
August, 2021
2
October, 2018
1
June, 2018
Available data
259
bam
258
fastq
249
bigWig
142
tsv
90
bed narrowPeak
80
zippedFastqFolder
bigBed narrowPeak
4
bedpe bed3+
4
hic
cool
3
tagAlign
1
bed bed3+
1
hdf5
Organism
408
Homo sapiens
Biosample type
tissue
321
primary cell
85
cell line
3
in vitro differentiated cells
Organ
428
epithelium
409
pancreas
121
liver
119
connective tissue
82
vasculature
80
blood vessel
74
heart
68
artery
37
embryo
36
kidney
15
blood
15
bodily fluid
10
brain
9
vein
5
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
256
AMP
149
HPAP
4
T1D
Genome assembly (visualization)
220
GRCh38
213
hg19
Lab
254
AMP-T2D consortium
149
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
biosample_type!
tissue
files.file_type!
bigBed narrowPeak
cool
BIOSAMPLE
ASSAY
409 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
52
13
12
29
31
pancreatic beta cell
21
13
12
16
16
pancreatic acinar cell
4
8
12
4
pancreatic ductal cell
4
13
10
pancreatic endocrine cell
23
+ See 5 more…
cell line
EndoC_BH1
33
15
19
6
2
1
1
Panc1
7
1
in vitro differentiated cells
pancreatic PP cell
3
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