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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
424
DNA binding
25
DNA accessibility
Target of assay
340
transcription factor
81
recombinant protein
79
histone
79
histone modification
73
RNA binding protein
41
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
27
December, 2018
23
June, 2019
19
October, 2019
17
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
Available data
1453
bam
1365
bigWig
979
fastq
801
bed narrowPeak
524
tsv
449
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
79
bed broadPeak
79
bigBed broadPeak
40
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
449
Homo sapiens
Biosample type
tissue
353
cell line
80
primary cell
16
in vitro differentiated cells
Organ
307
liver
59
epithelium
54
blood
54
bodily fluid
28
pancreas
15
vasculature
13
blood vessel
11
connective tissue
11
vein
8
musculature of body
6
brain
6
kidney
3
heart
2
eye
Project
449
AMP
Genome assembly (visualization)
445
hg19
413
GRCh38
Lab
449
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_title!
DNase-seq
biosample_type!
tissue
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
449 results
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ChIP-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
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in vitro differentiated cells
hepatocyte
14
adipocyte
2
See all biosamples
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