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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
645
ChIP-seq
213
total RNA-seq
52
ATAC-seq
10
pCHi-C
7
Hi-C
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
645
DNA binding
217
Transcription
52
DNA accessibility
7
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
406
transcription factor
123
histone
123
histone modification
111
control
89
recombinant protein
73
RNA binding protein
62
broad histone mark
60
narrow histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
127
May, 2021
96
February, 2021
84
August, 2021
67
August, 2017
61
November, 2018
39
February, 2018
35
October, 2019
28
December, 2018
24
December, 2017
23
January, 2019
21
February, 2023
14
March, 2020
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
May, 2020
1
October, 2022
Available data
796
bam
709
bigWig
548
fastq
501
bed narrowPeak
355
bigBed narrowPeak
212
tsv
58
bed broadPeak
58
bigBed broadPeak
57
tagAlign
27
bed bed3+
8
bedpe bed3+
7
bed bedgraph
6
bed bed3
5
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
947
Homo sapiens
Biosample type
2391
tissue
581
cell line
522
primary cell
369
in vitro differentiated cells
10
stem cell
Organ
415
liver
epithelium
96
connective tissue
94
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
61
blood
61
bodily fluid
37
embryo
18
kidney
1
adipose tissue
1
mammary gland
Project
943
AMP
5
T1D
2
community
Genome assembly (visualization)
753
hg19
658
GRCh38
4
hg18
Lab
855
AMP-T2D consortium
52
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
126
inconsistent ontology term
2
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
19
missing controlled_by
Audit category:
42
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
DNase-seq
month_released!
May, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
950 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
STARR-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
single cell RNA-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
H1-hESC
8
+ See 13 more…
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 26 more…
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