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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
104
total RNA-seq
3
ATAC-seq
DNase-seq
1
Hi-C
1
WGBS
Assay category
398
DNA binding
104
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
control
2
other context
2
other post-translational modification
Date released
255
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
18
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
507
bigWig
504
bam
402
bed narrowPeak
365
fastq
353
bigBed narrowPeak
119
tsv
58
bed broadPeak
58
bigBed broadPeak
16
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
507
Homo sapiens
Biosample type
1595
tissue
573
primary cell
507
cell line
258
in vitro differentiated cells
3
stem cell
Organ
319
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
55
pancreas
49
epithelium
11
kidney
8
embryo
Project
503
AMP
4
T1D
Genome assembly (visualization)
502
hg19
452
GRCh38
Lab
493
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
DNase-seq
files.file_type!
bed bed3
target.investigated_as!
control
BIOSAMPLE
ASSAY
507 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
313
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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