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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1160
total RNA-seq
1032
ChIP-seq
264
ATAC-seq
176
single cell RNA-seq
DNase-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
25
WGBS
19
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1352
Transcription
1032
DNA binding
296
DNA accessibility
36
DNA methylation
19
3D chromatin structure
Target of assay
686
histone modification
685
histone
361
narrow histone mark
323
broad histone mark
208
control
140
transcription factor
36
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
349
August, 2017
265
August, 2021
222
October, 2019
193
May, 2020
172
May, 2021
120
July, 2018
91
December, 2017
82
November, 2017
80
April, 2019
76
February, 2023
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
47
September, 2023
45
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
23
October, 2017
22
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1938
bam
1788
bigWig
1193
tsv
843
bed narrowPeak
507
fastq
343
bigBed narrowPeak
278
tagAlign
160
txt
64
xls
54
bed bed3+
37
bed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
14
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2855
Homo sapiens
Biosample type
2471
tissue
1026
primary cell
594
cell line
393
in vitro differentiated cells
10
stem cell
Organ
641
connective tissue
501
pancreas
487
adipose tissue
372
liver
287
heart
238
brain
231
kidney
158
bone element
128
blood vessel
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
39
epithelium
29
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2767
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1846
GRCh38
1825
hg19
4
hg18
Lab
2458
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
205
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
2864 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
6
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
+ See 153 more…
in vitro differentiated cells
adipocyte
5
67
8
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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