Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
26
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
single cell RNA-seq
Assay category
78
DNA binding
26
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
19
August, 2017
18
August, 2021
9
February, 2023
8
February, 2018
6
March, 2020
5
December, 2017
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
290
bam
bigWig
140
fastq
131
tsv
127
bed narrowPeak
40
tagAlign
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
Organism
124
Homo sapiens
Biosample type
1000
tissue
472
primary cell
139
cell line
124
in vitro differentiated cells
6
stem cell
Organ
33
connective tissue
7
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
124
AMP
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
82
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bed bed3+
bigWig
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
124 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
19
4
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
+ See 14 more…
See all biosamples
Download