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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
30
ATAC-seq
9
total RNA-seq
4
Hi-C
3
pCHi-C
2
single cell RNA-seq
Assay category
83
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
18
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
5
November, 2019
4
February, 2021
4
March, 2020
4
October, 2019
2
December, 2019
1
August, 2018
Available data
290
bam
bigWig
140
fastq
131
tsv
127
bed narrowPeak
40
tagAlign
23
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
ibed
Organism
131
Homo sapiens
Biosample type
1004
tissue
473
primary cell
140
cell line
131
in vitro differentiated cells
7
stem cell
Organ
38
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
131
AMP
Genome assembly (visualization)
39
hg19
22
GRCh38
Lab
89
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bigWig
ibed
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
1
2
pancreatic endoderm
6
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