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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
21
ATAC-seq
DNase-seq
Assay category
92
DNA binding
21
DNA accessibility
Target of assay
63
histone
63
histone modification
32
narrow histone mark
30
broad histone mark
29
transcription factor
4
RNA binding protein
2
chromatin remodeller
Date released
42
August, 2017
25
August, 2021
18
December, 2017
16
February, 2018
5
November, 2019
3
May, 2021
2
February, 2023
2
October, 2019
Available data
266
bam
238
bigWig
129
tsv
121
fastq
113
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
bigBed narrowPeak
2
ibed
Organism
113
Homo sapiens
Biosample type
795
tissue
388
cell line
176
primary cell
113
in vitro differentiated cells
2
stem cell
Organ
44
connective tissue
epithelium
14
embryo
14
liver
2
pancreas
Project
113
AMP
Genome assembly (visualization)
112
hg19
109
GRCh38
Lab
109
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
16
inconsistent control read length
assay_title!
DNase-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
neural progenitor cell
13
10
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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