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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
1
pCHi-C
Assay category
23
DNA binding
Target of assay
22
control
1
histone
1
histone modification
1
narrow histone mark
Date released
9
December, 2017
8
February, 2018
6
August, 2017
1
August, 2018
Available data
290
bam
bigWig
140
fastq
131
tsv
127
bed narrowPeak
40
tagAlign
23
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
Organism
24
Homo sapiens
Biosample type
174
primary cell
98
tissue
55
cell line
24
in vitro differentiated cells
1
stem cell
Organ
8
embryo
7
connective tissue
3
epithelium
1
adipose tissue
1
liver
Project
24
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
24
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bigWig
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
pCHi-C
in vitro differentiated cells
adipocyte
6
pancreatic endoderm
6
Hepatic endoderm
2
definitive endodermal cell
2
primitive gut cell
2
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