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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
32
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
DNase-seq
Assay category
198
DNA binding
138
Transcription
32
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
253
bigWig
140
fastq
131
tsv
122
bed narrowPeak
40
tagAlign
23
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
Organism
381
Homo sapiens
Biosample type
2559
tissue
1049
primary cell
583
cell line
381
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
381
AMP
Genome assembly (visualization)
284
hg19
259
GRCh38
4
hg18
Lab
334
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
DNase-seq
lab.title!
Struan F.A. Grant, CHOP
month_released!
November, 2019
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
381 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
7
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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