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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
233
total RNA-seq
199
ATAC-seq
172
single cell RNA-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
6
Hi-C
DNase-seq
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
405
Transcription
258
DNA binding
229
DNA accessibility
43
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
February, 2021
48
July, 2018
44
August, 2017
43
April, 2018
July, 2019
31
June, 2019
28
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
560
bigWig
559
bam
363
fastq
265
bed narrowPeak
245
tsv
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
bed broadPeak
21
bigBed broadPeak
6
hic
5
bed bed3+
4
bedpe bed3+
3
cool
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
957
Homo sapiens
Biosample type
1940
tissue
957
primary cell
506
cell line
367
in vitro differentiated cells
10
stem cell
Organ
363
epithelium
340
pancreas
22
connective tissue
20
vasculature
19
blood vessel
18
vein
17
kidney
10
liver
10
musculature of body
8
blood
8
bodily fluid
5
heart
3
brain
3
eye
1
bone element
1
bone marrow
Project
473
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
551
hg19
471
GRCh38
Lab
438
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
files.file_type!
bed broadPeak
month_released!
February, 2021
July, 2019
BIOSAMPLE
ASSAY
957 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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