Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
129
ATAC-seq
127
total RNA-seq
54
single cell RNA-seq
DNase-seq
29
snATAC-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
183
Transcription
181
DNA binding
159
DNA accessibility
10
DNA methylation
7
3D chromatin structure
Target of assay
161
histone
161
histone modification
88
broad histone mark
73
narrow histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
54
May, 2022
31
July, 2019
31
June, 2019
30
October, 2019
18
September, 2020
12
February, 2023
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
August, 2021
3
February, 2021
1
March, 2020
1
March, 2023
Available data
389
bigWig
382
bam
195
bed narrowPeak
162
tsv
fastq
96
tagAlign
73
zippedFastqFolder
58
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
557
Homo sapiens
Biosample type
1717
tissue
557
primary cell
208
in vitro differentiated cells
100
cell line
6
stem cell
Organ
146
epithelium
pancreas
30
connective tissue
25
vasculature
24
blood vessel
24
kidney
20
vein
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
7
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
280
AMP
204
T1D
72
HPAP
1
ITG
Genome assembly (visualization)
370
hg19
272
GRCh38
Lab
245
AMP-T2D consortium
239
Kyle Gaulton, UCSD
72
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
files.file_type!
fastq
month_released!
August, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
557 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
+ See 71 more…
See all biosamples
Download