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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
13
August, 2017
6
November, 2017
2
October, 2019
Available data
584
bigWig
580
bam
408
fastq
270
tsv
266
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
21
Homo sapiens
Biosample type
58
cell line
21
primary cell
Organ
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
21
AMP
Genome assembly (visualization)
21
hg19
18
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent assembly
assay_title!
DNase-seq
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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