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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
DNase-seq
22
ATAC-seq
6
Hi-C
1
FAIRE-seq
Assay category
57
DNA binding
23
DNA accessibility
6
3D chromatin structure
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
23
June, 2019
17
August, 2017
14
September, 2018
12
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
October, 2022
1
March, 2020
1
March, 2023
Available data
584
bigWig
580
bam
408
fastq
270
tsv
266
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
86
Homo sapiens
Biosample type
395
tissue
355
cell line
86
primary cell
20
in vitro differentiated cells
Organ
50
epithelium
25
pancreas
17
vasculature
15
blood vessel
13
vein
9
connective tissue
8
musculature of body
6
brain
6
kidney
3
heart
2
eye
Project
82
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
85
hg19
79
GRCh38
Lab
82
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
20
inconsistent ontology term
4
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
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