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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
238
DNA binding
79
DNA accessibility
4
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
109
narrow histone mark
7
RNA binding protein
7
control
7
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
44
August, 2017
43
April, 2018
23
June, 2019
22
July, 2019
21
October, 2019
November, 2017
7
August, 2020
5
December, 2019
5
September, 2017
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
575
bigWig
571
bam
399
fastq
270
tsv
260
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
74
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
575
Homo sapiens
Biosample type
1538
tissue
575
primary cell
258
in vitro differentiated cells
252
cell line
3
stem cell
Organ
209
epithelium
192
pancreas
26
connective tissue
18
kidney
17
blood vessel
17
vasculature
13
vein
10
musculature of body
9
liver
7
heart
6
brain
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
385
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
565
hg19
486
GRCh38
Lab
350
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
month_released!
November, 2017
BIOSAMPLE
ASSAY
575 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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