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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
57
total RNA-seq
16
pCHi-C
15
ATAC-seq
DNase-seq
1
DNAme array
1
FAIRE-seq
1
Hi-C
Assay category
145
DNA binding
57
Transcription
16
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
139
histone
139
histone modification
78
broad histone mark
61
narrow histone mark
6
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
192
bigWig
178
bam
146
bed narrowPeak
84
tagAlign
54
tsv
11
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
hic
1
tar
Organism
236
Homo sapiens
Biosample type
278
tissue
236
primary cell
140
in vitro differentiated cells
49
cell line
Organ
29
epithelium
19
blood vessel
19
vasculature
19
vein
9
kidney
1
bone element
1
bone marrow
1
connective tissue
1
liver
Project
151
T1D
85
AMP
Genome assembly (visualization)
208
hg19
169
GRCh38
Lab
186
Kyle Gaulton, UCSD
50
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
DNAme array
FAIRE-seq
Hi-C
primary cell
monocyte
85
52
1
13
1
CD8-positive, alpha-beta T cell
33
2
1
endothelial cell of umbilical vein
17
1
1
epithelial cell of proximal tubule
7
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
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