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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
257
DNA accessibility
247
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
44
August, 2017
43
April, 2018
28
July, 2019
27
October, 2019
23
June, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
574
bigWig
548
bam
392
fastq
267
tsv
266
bed narrowPeak
153
zippedFastqFolder
98
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1022
Homo sapiens
Biosample type
2393
tissue
1022
primary cell
577
cell line
356
in vitro differentiated cells
9
stem cell
Organ
367
epithelium
334
pancreas
30
connective tissue
27
vasculature
24
blood vessel
21
kidney
18
vein
11
liver
11
musculature of body
10
brain
8
blood
8
bodily fluid
8
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
493
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
596
hg19
506
GRCh38
Lab
461
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
month_released!
April, 2020
month_released!!
April, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
1022 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
7
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
7
21
23
12
16
1
exocrine cell
39
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