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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
148
ChIP-seq
56
snATAC-seq
47
WGBS
DNase-seq
10
Hi-C
9
RRBS
1
FAIRE-seq
1
pCHi-C
1
small RNA-seq
Assay category
379
Transcription
244
DNA accessibility
148
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
111
histone
111
histone modification
59
narrow histone mark
52
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
30
October, 2019
28
July, 2019
21
June, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
419
bam
408
fastq
403
bigWig
216
tsv
153
zippedFastqFolder
131
bed narrowPeak
72
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
838
Homo sapiens
Biosample type
2509
tissue
838
primary cell
639
cell line
261
in vitro differentiated cells
10
stem cell
Organ
388
epithelium
346
pancreas
32
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
460
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
411
hg19
350
GRCh38
Lab
460
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
month_released!
May, 2021
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
838 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
pCHi-C
small RNA-seq
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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