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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
200
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
429
Transcription
264
DNA binding
257
DNA accessibility
55
DNA methylation
10
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
28
June, 2019
24
July, 2019
21
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
November, 2018
Available data
566
bigWig
559
bam
407
fastq
264
tsv
254
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
74
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
1032
Homo sapiens
Biosample type
2342
tissue
1032
primary cell
577
cell line
393
in vitro differentiated cells
8
stem cell
Organ
388
epithelium
346
pancreas
33
connective tissue
31
vasculature
27
blood vessel
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
503
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
585
hg19
491
GRCh38
Lab
468
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
month_released!
November, 2018
organ_slims!
kidney
BIOSAMPLE
ASSAY
1032 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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