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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
16
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
256
DNA accessibility
256
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
31
June, 2019
26
July, 2019
11
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
561
bigWig
554
bam
402
fastq
268
tsv
251
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
65
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1025
Homo sapiens
Biosample type
2471
tissue
1025
primary cell
594
cell line
393
in vitro differentiated cells
10
stem cell
Organ
388
epithelium
346
pancreas
33
connective tissue
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
Project
497
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
580
hg19
493
GRCh38
Lab
462
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
organ_slims!
bone marrow
vasculature
BIOSAMPLE
ASSAY
1025 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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