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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
844
ChIP-seq
252
ATAC-seq
171
single cell RNA-seq
DNase-seq
87
RNA microarray
29
pCHi-C
26
WGBS
18
snATAC-seq
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1213
Transcription
844
DNA binding
274
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
581
histone modification
580
histone
310
narrow histone mark
270
broad histone mark
171
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
282
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
51
December, 2017
47
September, 2023
44
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
23
October, 2017
22
February, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1655
bam
1543
bigWig
1073
tsv
753
bed narrowPeak
371
fastq
336
bigBed narrowPeak
238
tagAlign
157
txt
64
xls
37
bed broadPeak
32
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2494
Homo sapiens
Biosample type
2494
tissue
1057
primary cell
660
cell line
393
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
498
pancreas
486
adipose tissue
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2424
AMP
47
KPMP
31
T1D
2
community
Genome assembly (visualization)
1625
GRCh38
1537
hg19
1
hg18
Lab
2169
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
lab.title!
Xin Sun, UCSD
organ_slims!
limb
BIOSAMPLE
ASSAY
2504 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
70
68
6
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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