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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
830
ChIP-seq
634
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
DNase-seq
86
RNA microarray
28
pCHi-C
28
snATAC-seq
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
830
DNA binding
830
Transcription
286
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
598
histone modification
597
histone
313
narrow histone mark
284
broad histone mark
160
control
74
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
237
October, 2019
228
August, 2021
225
August, 2017
193
May, 2020
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
December, 2017
51
October, 2018
47
September, 2023
43
March, 2020
40
May, 2021
40
May, 2024
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
14
May, 2023
8
January, 2021
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
March, 2023
1
August, 2022
Available data
1288
bam
1174
bigWig
795
bed narrowPeak
681
tsv
373
bigBed narrowPeak
322
fastq
230
tagAlign
157
txt
64
xls
36
bed broadPeak
28
bed bed3+
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2106
Homo sapiens
Biosample type
2106
tissue
1055
primary cell
632
cell line
392
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
498
pancreas
adipose tissue
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
20
lung
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2017
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1262
GRCh38
1172
hg19
1
hg18
Lab
1762
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
month_released!
December, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2116 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
71
292
68
6
4
7
3
1
1
4
liver
145
167
20
1
1
3
1
1
1
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
+ See 152 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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