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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
22
total RNA-seq
16
ATAC-seq
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
202
DNA binding
22
Transcription
16
DNA accessibility
1
3D chromatin structure
Target of assay
174
histone
174
histone modification
131
narrow histone mark
43
broad histone mark
28
control
Date released
545
February, 2021
282
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
51
December, 2017
47
September, 2023
44
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
189
bam
162
bigWig
153
bed narrowPeak
49
bigBed narrowPeak
49
tagAlign
8
tsv
7
fastq
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
245
Homo sapiens
Biosample type
245
tissue
51
cell line
30
primary cell
8
in vitro differentiated cells
0
stem cell
Organ
86
brain
65
limb
40
nerve
24
artery
24
blood vessel
24
vasculature
21
eye
8
heart
7
spleen
6
liver
4
gonad
4
kidney
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
245
AMP
Genome assembly (visualization)
165
hg19
163
GRCh38
Lab
245
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
245 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
tibial artery
23
1
heart
5
2
1
spleen
7
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