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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
155
ChIP-seq
33
ATAC-seq
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
176
Transcription
155
DNA binding
33
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
53
August, 2017
48
December, 2017
40
May, 2022
14
February, 2023
8
July, 2019
6
October, 2019
4
November, 2018
3
March, 2020
1
December, 2019
1
February, 2020
1
February, 2021
Available data
285
bam
262
bigWig
157
tsv
122
bed narrowPeak
80
fastq
70
tagAlign
46
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
372
Homo sapiens
Biosample type
479
cell line
388
primary cell
372
tissue
24
in vitro differentiated cells
0
stem cell
Organ
546
connective tissue
498
pancreas
486
adipose tissue
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
372
AMP
Genome assembly (visualization)
277
hg19
235
GRCh38
Lab
332
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
372 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
RNA microarray
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
1
right lobe of liver
3
10
1
1
2
pigmented layer of retina
2
12
renal glomerulus
1
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