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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
949
total RNA-seq
312
ChIP-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
25
ATAC-seq
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
3
snDrop-seq
2
snATAC-seq
DNase-seq
Assay category
1078
Transcription
312
DNA binding
38
DNA methylation
27
DNA accessibility
13
3D chromatin structure
Target of assay
185
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
Date released
537
February, 2021
217
August, 2017
166
May, 2020
120
July, 2018
99
August, 2021
91
October, 2019
70
July, 2019
38
March, 2020
38
May, 2021
29
October, 2018
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
15
April, 2019
14
February, 2023
12
December, 2017
10
October, 2017
9
November, 2018
6
April, 2018
6
September, 2017
4
December, 2018
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1705
bam
1534
bigWig
1075
tsv
bed narrowPeak
384
bigBed narrowPeak
341
fastq
238
tagAlign
94
txt
35
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1580
Homo sapiens
Biosample type
1582
tissue
341
primary cell
218
cell line
212
in vitro differentiated cells
6
stem cell
Organ
534
connective tissue
475
adipose tissue
337
pancreas
227
liver
150
bone element
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
21
kidney
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1580
AMP
2
T1D
Genome assembly (visualization)
973
hg19
962
GRCh38
Lab
1582
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bed narrowPeak
organ_slims!
blood
BIOSAMPLE
ASSAY
1582 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
snDrop-seq
snATAC-seq
tissue
adipose tissue
382
1
3
2
1
islet of Langerhans
280
51
6
15
4
1
1
1
liver
147
63
1
3
1
1
1
1
bone element
84
bone tissue
58
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