Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ATAC-seq
9
RRBS
1
ChIP-seq
Assay category
173
DNA accessibility
9
DNA methylation
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
64
August, 2021
63
February, 2023
20
November, 2019
18
May, 2022
8
February, 2021
6
July, 2019
3
August, 2017
1
November, 2017
Available data
1730
bam
bigWig
1076
tsv
807
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
183
Homo sapiens
Biosample type
183
tissue
26
primary cell
17
in vitro differentiated cells
10
cell line
Organ
65
kidney
39
pancreas
36
heart
35
artery
35
blood vessel
35
vasculature
27
eye
12
epithelium
8
bone element
8
skeleton
6
limb
2
adipose tissue
2
brain
2
connective tissue
2
musculature of body
1
liver
1
pericardium
Project
183
AMP
Genome assembly (visualization)
128
GRCh38
83
hg19
Lab
101
AMP-T2D consortium
64
Katalin Susztak, Upenn
18
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
RRBS
ChIP-seq
tissue
kidney
64
1
islet of Langerhans
37
1
coronary artery
35
retina
15
pigmented layer of retina
12
+ See 17 more…
See all biosamples
Download