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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
89
ChIP-seq
21
ATAC-seq
DNase-seq
3
small RNA-seq
Assay category
152
Transcription
89
DNA binding
21
DNA accessibility
Target of assay
50
histone modification
49
histone
39
transcription factor
36
narrow histone mark
13
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
170
May, 2020
36
December, 2017
20
May, 2022
18
August, 2017
7
July, 2019
6
October, 2019
4
November, 2018
1
March, 2020
Available data
285
bam
262
bigWig
154
tsv
110
bed narrowPeak
80
fastq
70
tagAlign
46
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
262
Homo sapiens
Biosample type
332
cell line
262
tissue
14
in vitro differentiated cells
9
primary cell
Organ
479
connective tissue
421
adipose tissue
366
pancreas
262
liver
175
brain
130
heart
65
blood vessel
65
vasculature
58
bone element
55
limb
29
nerve
25
musculature of body
23
artery
23
kidney
15
spleen
1
pituitary gland
Project
262
AMP
Genome assembly (visualization)
262
hg19
234
GRCh38
Lab
242
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
262 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
tissue
liver
147
82
20
1
right lobe of liver
2
7
1
2
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