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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
91
total RNA-seq
10
ATAC-seq
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
220
DNA binding
97
Transcription
13
DNA methylation
12
DNA accessibility
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
174
August, 2017
58
October, 2018
48
December, 2017
May, 2022
17
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
March, 2019
Available data
1705
bam
1575
bigWig
1076
tsv
769
bed narrowPeak
384
bigBed narrowPeak
342
fastq
238
tagAlign
150
txt
64
xls
36
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
335
Homo sapiens
Biosample type
427
cell line
408
primary cell
342
tissue
140
in vitro differentiated cells
4
stem cell
Organ
185
pancreas
80
liver
42
adipose tissue
42
connective tissue
23
spleen
10
brain
2
musculature of body
Project
342
AMP
Genome assembly (visualization)
270
GRCh38
266
hg19
Lab
341
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
month_released!
March, 2019
May, 2022
BIOSAMPLE
ASSAY
342 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
91
1
6
1
liver
67
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
16
2
1
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