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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
903
ChIP-seq
181
ATAC-seq
DNase-seq
132
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1166
Transcription
903
DNA binding
211
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
234
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1730
bam
1595
bigWig
1071
tsv
744
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
153
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2443
Homo sapiens
Biosample type
2452
tissue
969
primary cell
654
cell line
377
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
485
adipose tissue
480
pancreas
357
liver
250
heart
237
brain
184
kidney
150
bone element
93
blood vessel
93
vasculature
86
limb
50
musculature of body
41
nerve
34
artery
24
spleen
22
eye
20
lung
8
skeleton
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2420
AMP
19
LungMap
13
T1D
Genome assembly (visualization)
1647
GRCh38
1561
hg19
Lab
2165
AMP-T2D consortium
142
Katalin Susztak, Upenn
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
lab.title!
KPMP
month_released!
February, 2023
organ_slims!
ovary
BIOSAMPLE
ASSAY
2452 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
67
57
6
5
4
3
1
1
4
adipose tissue
382
2
2
3
1
liver
167
145
20
1
3
1
1
1
1
kidney
49
27
75
17
6
1
1
1
bone element
84
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