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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
1
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
24
bigWig
19
bed narrowPeak
15
tagAlign
13
bed broadPeak
12
bam
7
tsv
6
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
49
Homo sapiens
Biosample type
49
tissue
13
primary cell
Organ
544
connective tissue
498
pancreas
485
adipose tissue
317
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
lab.title!
Karen Mohlke, UNC
month_released!
January, 2018
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
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