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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
937
total RNA-seq
676
ChIP-seq
257
ATAC-seq
179
single cell RNA-seq
DNase-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
17
WGBS
15
small RNA-seq
10
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1131
Transcription
676
DNA binding
287
DNA accessibility
23
DNA methylation
10
3D chromatin structure
Target of assay
493
histone
493
histone modification
270
narrow histone mark
223
broad histone mark
145
control
40
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
545
February, 2021
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
35
March, 2020
23
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1501
bam
1370
bigWig
980
tsv
700
bed narrowPeak
321
bigBed narrowPeak
179
tagAlign
156
txt
145
fastq
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
bed broadPeak
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
2
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
2243
Homo sapiens
Biosample type
2245
tissue
987
primary cell
660
cell line
283
in vitro differentiated cells
7
stem cell
Organ
488
connective tissue
429
adipose tissue
352
pancreas
286
heart
256
liver
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2148
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1479
GRCh38
1365
hg19
Lab
1893
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
month_released!
August, 2017
December, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2245 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
29
68
6
7
4
3
1
4
liver
167
59
20
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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