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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
915
total RNA-seq
529
ChIP-seq
241
ATAC-seq
179
single cell RNA-seq
DNase-seq
87
RNA microarray
27
snATAC-seq
20
pCHi-C
17
WGBS
15
small RNA-seq
9
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1109
Transcription
529
DNA binding
271
DNA accessibility
23
DNA methylation
9
3D chromatin structure
Target of assay
330
histone
330
histone modification
187
broad histone mark
143
narrow histone mark
130
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
35
March, 2020
23
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1367
bam
1250
bigWig
972
tsv
589
bed narrowPeak
314
bigBed narrowPeak
193
fastq
156
txt
130
tagAlign
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
bed broadPeak
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
2
bed bed3+
1
bedpe
Organism
2053
Homo sapiens
Biosample type
2055
tissue
957
primary cell
632
cell line
318
in vitro differentiated cells
10
stem cell
Organ
486
connective tissue
428
adipose tissue
349
pancreas
298
liver
278
heart
227
kidney
158
bone element
152
brain
104
blood vessel
104
vasculature
45
artery
32
eye
musculature of body
24
spleen
21
limb
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1958
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1358
GRCh38
1242
hg19
Lab
1703
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
month_released!
August, 2017
October, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2055 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
1
liver
166
92
20
1
1
1
1
islet of Langerhans
189
8
55
6
7
3
1
4
kidney
49
23
75
64
6
1
1
1
bone element
84
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