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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
825
ChIP-seq
221
ATAC-seq
179
single cell RNA-seq
DNase-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
825
DNA binding
252
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
558
histone modification
557
histone
296
narrow histone mark
261
broad histone mark
175
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
237
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1637
bam
1518
bigWig
1076
tsv
711
bed narrowPeak
343
fastq
327
bigBed narrowPeak
172
tagAlign
150
txt
64
xls
31
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2441
Homo sapiens
Biosample type
2450
tissue
914
primary cell
393
in vitro differentiated cells
345
cell line
10
stem cell
Organ
545
connective tissue
486
adipose tissue
474
pancreas
317
liver
286
heart
231
kidney
158
bone element
156
brain
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
48
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2353
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1625
GRCh38
1549
hg19
Lab
2162
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
month_released!
May, 2022
November, 2017
organ_slims!
skin of body
BIOSAMPLE
ASSAY
2450 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
286
71
49
6
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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