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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
280
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
292
DNA accessibility
280
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
159
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
70
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
25
February, 2020
20
April, 2019
19
April, 2020
17
November, 2018
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1265
bam
1076
tsv
1074
bigWig
294
fastq
288
bed narrowPeak
157
txt
72
bigBed narrowPeak
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
17
bed bed3+
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
2
bed broadPeak
1
bedpe
Organism
1969
Homo sapiens
Biosample type
1972
tissue
812
primary cell
562
cell line
281
in vitro differentiated cells
8
stem cell
Organ
512
connective tissue
454
adipose tissue
425
pancreas
288
liver
211
kidney
191
heart
158
bone element
74
blood vessel
74
vasculature
54
brain
51
eye
49
artery
37
limb
25
musculature of body
20
lung
18
spleen
17
nerve
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1877
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1189
GRCh38
1157
hg19
Lab
1655
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
assay_title!
DNase-seq
organ_slims!
blood
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1972 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
20
68
6
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
1
3
1
1
1
1
kidney
49
7
75
64
6
1
1
1
bone element
84
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