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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
74
ChIP-seq
18
ATAC-seq
6
WGBS
DNase-seq
2
RNA microarray
2
small RNA-seq
1
pCHi-C
Assay category
459
Transcription
74
DNA binding
18
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
23
October, 2018
15
February, 2023
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
December, 2019
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
496
bam
479
bigWig
460
tsv
42
fastq
23
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
559
Homo sapiens
Biosample type
560
tissue
421
primary cell
120
in vitro differentiated cells
78
cell line
1
stem cell
Organ
545
connective tissue
498
pancreas
486
adipose tissue
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
560
AMP
Genome assembly (visualization)
492
hg19
478
GRCh38
Lab
560
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
560 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
RNA microarray
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
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