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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
115
Transcription
82
DNA accessibility
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
85
bed narrowPeak
64
xls
62
txt
30
bam
23
bigWig
19
bigBed narrowPeak
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
231
Homo sapiens
Biosample type
231
tissue
24
primary cell
18
cell line
Organ
545
connective tissue
498
pancreas
486
adipose tissue
357
liver
286
heart
238
brain
231
kidney
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
47
KPMP
Genome assembly (visualization)
97
GRCh38
25
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
42
AMP-T2D consortium
Audit category:
7
audit script error
assay_title!
DNase-seq
organ_slims!
bone element
large intestine
BIOSAMPLE
ASSAY
231 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
64
49
27
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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