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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
21
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
53
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
6
October, 2019
4
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
Available data
285
bam
262
bigWig
154
tsv
110
bed narrowPeak
80
fastq
70
tagAlign
46
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
357
Homo sapiens
Biosample type
401
cell line
357
tissue
15
in vitro differentiated cells
12
primary cell
Organ
545
connective tissue
498
pancreas
486
adipose tissue
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
357
AMP
Genome assembly (visualization)
265
hg19
235
GRCh38
Lab
317
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
organ_slims!
eye
BIOSAMPLE
ASSAY
357 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
1
right lobe of liver
3
10
1
1
2
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