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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
90
ChIP-seq
62
ATAC-seq
11
snATAC-seq
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
WGBS
2
FAIRE-seq
2
MeRIP-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
90
DNA binding
75
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
137
August, 2017
120
July, 2018
40
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
6
April, 2018
6
July, 2019
5
March, 2019
5
November, 2018
5
October, 2017
3
October, 2019
2
August, 2021
2
November, 2020
1
August, 2022
1
February, 2020
1
May, 2019
Available data
401
bam
366
bigWig
275
tsv
192
fastq
116
bed narrowPeak
55
bigBed narrowPeak
19
bed bed3+
14
bed broadPeak
14
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
463
Homo sapiens
Biosample type
469
tissue
334
primary cell
80
cell line
2
in vitro differentiated cells
Organ
521
connective tissue
469
pancreas
462
adipose tissue
311
liver
270
heart
225
kidney
213
brain
158
bone element
112
blood vessel
112
vasculature
69
limb
62
artery
53
eye
46
musculature of body
30
nerve
20
lung
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
439
AMP
30
T1D
Genome assembly (visualization)
406
hg19
377
GRCh38
Lab
408
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
469 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
MeRIP-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
37
58
7
6
3
1
2
1
body of pancreas
3
26
4
2
2
pancreas
2
13
4
1
2
1
1
1
endocrine pancreas
14
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