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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
879
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
879
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
nucleotide modification
Date released
545
February, 2021
280
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1707
bam
1568
bigWig
1076
tsv
781
bed narrowPeak
364
bigBed narrowPeak
352
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
27
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2560
Homo sapiens
Biosample type
2569
tissue
1047
primary cell
592
cell line
382
in vitro differentiated cells
10
stem cell
Organ
540
connective tissue
488
pancreas
481
adipose tissue
355
liver
276
heart
238
brain
230
kidney
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2472
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1655
GRCh38
1572
hg19
Lab
2224
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
target.investigated_as!
RNA binding protein
nucleotide modification
BIOSAMPLE
ASSAY
2569 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
69
68
6
7
4
3
1
1
2
adipose tissue
382
2
3
3
1
liver
167
144
20
1
3
1
1
1
1
kidney
49
26
75
64
6
1
1
1
bone element
84
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