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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
DNase-seq
Assay category
244
DNA binding
89
Transcription
15
DNA methylation
Target of assay
149
histone modification
148
histone
79
broad histone mark
68
narrow histone mark
50
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
348
August, 2017
341
May, 2020
319
August, 2021
240
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
87
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
16
January, 2021
16
October, 2017
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
284
fastq
278
bam
268
bigWig
138
bed narrowPeak
89
tsv
85
tagAlign
bed broadPeak
bigBed narrowPeak
33
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
347
Homo sapiens
Biosample type
241
tissue
67
in vitro differentiated cells
40
primary cell
Organ
165
pancreas
121
connective tissue
54
adipose tissue
47
liver
26
epithelium
13
musculature of body
Project
348
AMP
Genome assembly (visualization)
214
hg19
211
GRCh38
Lab
348
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
DNase-seq
files.file_type!
bed broadPeak
bigBed narrowPeak
BIOSAMPLE
ASSAY
348 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
36
89
liver
43
3
1
subcutaneous abdominal adipose tissue
35
3
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
1
1
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