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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
12
ATAC-seq
10
total RNA-seq
6
Hi-C
2
RRBS
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
13
DNA accessibility
13
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
24
August, 2017
10
June, 2019
8
February, 2021
8
February, 2023
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
35
bed narrowPeak
34
bigWig
32
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
Organism
74
Homo sapiens
Biosample type
62
tissue
12
primary cell
Organ
932
pancreas
782
liver
671
connective tissue
499
epithelium
486
adipose tissue
355
heart
269
kidney
252
brain
223
vasculature
220
blood vessel
159
bone element
137
artery
85
limb
68
blood
68
bodily fluid
58
musculature of body
56
eye
41
nerve
36
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
48
hg19
27
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
files.file_type!
bigBed bedMethyl
month_released!
January, 2018
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
muscle of leg
7
gastrocnemius medialis
1
4
psoas muscle
2
2
1
acetabular part of hip bone
1
1
+ See 12 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
See all biosamples
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