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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
189
total RNA-seq
23
ATAC-seq
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
237
DNA binding
193
Transcription
23
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
97
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
49
November, 2018
40
May, 2022
35
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
362
bam
349
bigWig
187
bed narrowPeak
174
tsv
147
fastq
104
bigBed narrowPeak
74
tagAlign
8
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
467
Homo sapiens
Biosample type
356
tissue
85
cell line
15
in vitro differentiated cells
11
primary cell
Organ
932
pancreas
672
connective tissue
493
epithelium
487
adipose tissue
467
liver
355
heart
269
kidney
217
blood vessel
217
vasculature
161
brain
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
59
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
467
AMP
Genome assembly (visualization)
352
hg19
308
GRCh38
Lab
396
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
files.file_type!
bigBed bedMethyl
month_released!
November, 2017
BIOSAMPLE
ASSAY
467 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
1
3
1
1
1
right lobe of liver
10
3
1
1
2
cell line
HepG2
63
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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