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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
5
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
19
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
November, 2017
1
February, 2020
Available data
73
bam
60
bigWig
50
bed narrowPeak
49
bigBed narrowPeak
10
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
84
Homo sapiens
Biosample type
59
tissue
25
primary cell
Organ
927
pancreas
784
liver
675
connective tissue
500
epithelium
489
adipose tissue
363
heart
268
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
62
hg19
54
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
files.file_type!
csv
month_released!
September, 2017
organ_slims!
artery
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
endothelial cell of hepatic sinusoid
1
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