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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
DNase-seq
5
total RNA-seq
4
single cell RNA-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
68
DNA binding
9
Transcription
3
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
18
October, 2019
9
July, 2019
6
November, 2017
4
August, 2021
2
March, 2020
1
February, 2020
Available data
76
bam
63
bigWig
52
bed narrowPeak
51
bigBed narrowPeak
10
tsv
6
bed broadPeak
6
bigBed broadPeak
6
fastq
hic
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
85
Homo sapiens
Biosample type
58
tissue
27
primary cell
Organ
926
pancreas
783
liver
674
connective tissue
499
epithelium
488
adipose tissue
360
heart
272
kidney
238
brain
222
vasculature
218
blood vessel
159
bone element
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
57
eye
41
nerve
37
embryo
23
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
63
hg19
56
GRCh38
Lab
85
AMP-T2D consortium
assay_title!
DNase-seq
files.file_type!
hic
month_released!
October, 2017
organ_slims!
artery
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
13
1
4
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
primary cell
endothelial cell of umbilical vein
17
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
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